PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do024826.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 262aa    MW: 28616.8 Da    PI: 5.9119
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do024826.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.67.2e-11101148454
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 ++  rE+ RRd++N++f eL  +l +    + +K++K++iL  A++ + +L
  Do024826.1 101 TKACREKIRRDKLNERFLELGAILEPG---KTPKMDKSAILNDAIRVVGEL 148
                 7789**********************9...9**************987665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.4E-1396168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.59597148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.05E-9100153No hitNo description
Gene3DG3DSA:4.10.280.101.3E-13101161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-8101148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.0E-10103154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:1.20.5.1704.1E-4162195No hitNo description
CDDcd146864.69E-4163195No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MASPEGTTWV FDCPLMDDLA VAADFAPAPA GGFFWSAAPP MQPLAVQAVA AASAPIPCFN  60
FCSVEISGSA DCDQGKEQPT NKRFVSLFFF PRSEGTAQPS TKACREKIRR DKLNERFLEL  120
GAILEPGKTP KMDKSAILND AIRVVGELRS ESQKLKDSNE SLQEKIKELK AEKNELRDEK  180
QRLKAEKESL EQQIKFLNSR PSLVPHPPMI PASAFAAPQG PAAAGHKLMM PVISYPGFPM  240
WQFMPPSDVD TSNDPKSCPP VA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ8586651e-168HQ858665.1 Zea mays clone UT604 bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004957935.11e-152PREDICTED: transcription factor ILR3 isoform X1
SwissprotQ9FH373e-76ILR3_ARATH; Transcription factor ILR3
TrEMBLK3ZW951e-152K3ZW95_SETIT; Uncharacterized protein
STRINGSi030877m1e-152(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20233885
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54680.18e-68bHLH family protein